Open data & software

Computer Animation We believe in open and accessible science. All software and data from our publications are made freely available. If you have any questions or issues, please don't hesitate to raise an issue on the respective GitHub repository.

Network Spatial Coherence Package

A framework for evaluating the "spatial coherence" of networks used in sequencing-based microscopy. It offers a set of ground-truth-agnostic metrics to determine how well a network's topology preserves original 2D or 3D spatial relationships by measuring its consistency with Euclidean geometric laws.

pip install network-spatial-coherence

PyPI GitHub Zenodo

"Alphamorph" transform package

pip install alphamorph

PyPI GitHub

Hidden Network Slide-tags Package

Zenodo GitHub

STRND - Spatial Reconstruction Package

pip install strnd

PyPI GitHub

Spatial Tolerance Anylsis Data & Code

Intertangler/spatial_tolerance: Spatial Tolerance initial release

GitHub Zenodo