We believe in open and accessible science. Software and data from our publications are freely available.
We believe in open and accessible science. All software and data from our publications are made freely available. If you have any questions or issues, please don't hesitate to raise an issue on the respective GitHub repository.
Master Schemer is a CAD-style editor for molecular programming schemes. Lines, segments, cards and arrows are tracked objects carrying labels, colors, patterns and data rather than plain ink, so a strand drawn on the canvas keeps what makes it a strand: sub-segments with their own colors and sequences, links to the objects it binds, and LaTeX labels that survive the export. It runs as a desktop application on macOS, Windows and Linux, and writes out SVG and CSV.
A framework for evaluating the "spatial coherence" of networks used in sequencing-based microscopy. It offers a set of ground-truth-agnostic metrics to determine how well a network's topology preserves original 2D or 3D spatial relationships by measuring its consistency with Euclidean geometric laws.
pip install network-spatial-coherence
pip install alphamorph
pip install strnd
Intertangler/spatial_tolerance: Spatial Tolerance initial release
